No. words: 1405; after pruning: 1379


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.8 (1,1:648)  623  0.62 0.15 0.15  MoSU018F_D08_BE443312Ta22P005H03P023D091F1_058.ab1        1   649 (55)  C MoSU018R_D08_BE443312Ta22P005H03P023D091R1_058.ab1   (52)   649     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  308 nodes

 156 str. conn. components

Path
    1  C MoSU018R_D08_BE443312Ta22P005H03P023D091R1_058.ab1   701 
   70    MoSU018F_D08_BE443312Ta22P005H03P023D091F1_058.ab1    17 
  269  C MoSU018R_D08_BE443312Ta22P005H03P023D091R1_058.ab1   433 
  277    MoSU018F_D08_BE443312Ta22P005H03P023D091F1_058.ab1   224 
  401  C MoSU018R_D08_BE443312Ta22P005H03P023D091R1_058.ab1   301 
  409    MoSU018F_D08_BE443312Ta22P005H03P023D091F1_058.ab1   356 
  429  C MoSU018R_D08_BE443312Ta22P005H03P023D091R1_058.ab1   273 
  437    MoSU018F_D08_BE443312Ta22P005H03P023D091F1_058.ab1   384 
  477  C MoSU018R_D08_BE443312Ta22P005H03P023D091R1_058.ab1   225 
  533    MoSU018F_D08_BE443312Ta22P005H03P023D091F1_058.ab1   480 
  561  C MoSU018R_D08_BE443312Ta22P005H03P023D091R1_058.ab1   141 
  569    MoSU018F_D08_BE443312Ta22P005H03P023D091F1_058.ab1   516 
  577  C MoSU018R_D08_BE443312Ta22P005H03P023D091R1_058.ab1   125 
  605    MoSU018F_D08_BE443312Ta22P005H03P023D091F1_058.ab1   552 
  637  C MoSU018R_D08_BE443312Ta22P005H03P023D091R1_058.ab1    65 
  641    MoSU018F_D08_BE443312Ta22P005H03P023D091F1_058.ab1   588 
  682  C MoSU018R_D08_BE443312Ta22P005H03P023D091R1_058.ab1    20 
  686    MoSU018F_D08_BE443312Ta22P005H03P023D091F1_058.ab1   633 
Contig length: old 756, new 757

Contig length: old 757, new 756
New start: 0 
S Change at: 59; seg lengths: entry 1, contig 1
D Change at: 63; seg lengths: entry 3, contig 4