No. words: 1339; after pruning: 1313


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.4 (1,1:681)  598  0.00 0.00 0.00  MoSU018F_A01_BE443312Td01P023A08P005H091F1_015.ab1        1   605 (0)  C MoSU018R_A01_BE443312Td01P023A08P005H091R1_015.ab1   (52)   682    78 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  304 nodes

 154 str. conn. components

Path
    1  C MoSU018R_A01_BE443312Td01P023A08P005H091R1_015.ab1   734 
   72    MoSU018F_A01_BE443312Td01P023A08P005H091F1_015.ab1    20 
   80  C MoSU018R_A01_BE443312Td01P023A08P005H091R1_015.ab1   655 
   96    MoSU018F_A01_BE443312Td01P023A08P005H091F1_015.ab1    44 
  116  C MoSU018R_A01_BE443312Td01P023A08P005H091R1_015.ab1   619 
  120    MoSU018F_A01_BE443312Td01P023A08P005H091F1_015.ab1    68 
  156  C MoSU018R_A01_BE443312Td01P023A08P005H091R1_015.ab1   579 
  164    MoSU018F_A01_BE443312Td01P023A08P005H091F1_015.ab1   112 
  504  C MoSU018R_A01_BE443312Td01P023A08P005H091R1_015.ab1   231 
  516    MoSU018F_A01_BE443312Td01P023A08P005H091F1_015.ab1   464 
  528  C MoSU018R_A01_BE443312Td01P023A08P005H091R1_015.ab1   207 
  532    MoSU018F_A01_BE443312Td01P023A08P005H091F1_015.ab1   480 
  564  C MoSU018R_A01_BE443312Td01P023A08P005H091R1_015.ab1   171 
  572    MoSU018F_A01_BE443312Td01P023A08P005H091F1_015.ab1   520 
  596  C MoSU018R_A01_BE443312Td01P023A08P005H091R1_015.ab1   139 
  616    MoSU018F_A01_BE443312Td01P023A08P005H091F1_015.ab1   564 
  620  C MoSU018R_A01_BE443312Td01P023A08P005H091R1_015.ab1   115 
Contig length: old 734, new 734

Contig length: old 734, new 734
New start: 0