No. words: 1466; after pruning: 1440


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.2 (1,1:682)  675  0.00 0.00 0.00  MoSU018F_D01_BE443312Td04P023A08P005H091F1_009.ab1        1   683 (54)  C MoSU018R_D01_BE443312Td04P023A08P005H091R1_009.ab1   (46)   683     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  342 nodes

 173 str. conn. components

Path
    1  C MoSU018R_D01_BE443312Td04P023A08P005H091R1_009.ab1   729 
   55    MoSU018F_D01_BE443312Td04P023A08P005H091F1_009.ab1     9 
   79  C MoSU018R_D01_BE443312Td04P023A08P005H091R1_009.ab1   651 
   83    MoSU018F_D01_BE443312Td04P023A08P005H091F1_009.ab1    37 
   87  C MoSU018R_D01_BE443312Td04P023A08P005H091R1_009.ab1   643 
   91    MoSU018F_D01_BE443312Td04P023A08P005H091F1_009.ab1    45 
  143  C MoSU018R_D01_BE443312Td04P023A08P005H091R1_009.ab1   587 
  147    MoSU018F_D01_BE443312Td04P023A08P005H091F1_009.ab1   101 
  151  C MoSU018R_D01_BE443312Td04P023A08P005H091R1_009.ab1   579 
  159    MoSU018F_D01_BE443312Td04P023A08P005H091F1_009.ab1   113 
  499  C MoSU018R_D01_BE443312Td04P023A08P005H091R1_009.ab1   231 
  503    MoSU018F_D01_BE443312Td04P023A08P005H091F1_009.ab1   457 
  523  C MoSU018R_D01_BE443312Td04P023A08P005H091R1_009.ab1   207 
  527    MoSU018F_D01_BE443312Td04P023A08P005H091F1_009.ab1   481 
  639  C MoSU018R_D01_BE443312Td04P023A08P005H091R1_009.ab1    91 
  651    MoSU018F_D01_BE443312Td04P023A08P005H091F1_009.ab1   605 
  667  C MoSU018R_D01_BE443312Td04P023A08P005H091R1_009.ab1    63 
  679    MoSU018F_D01_BE443312Td04P023A08P005H091F1_009.ab1   633 
  711  C MoSU018R_D01_BE443312Td04P023A08P005H091R1_009.ab1    19 
  715    MoSU018F_D01_BE443312Td04P023A08P005H091F1_009.ab1   669 
Contig length: old 783, new 783

Contig length: old 783, new 783
New start: 0