No. words: 1482; after pruning: 1456


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.4 (1,1:697)  686  0.00 0.00 0.14  MoSU018F_H01_BE443312Td08P023A08P005H091F1_001.ab1        1   698 (41)  C MoSU018R_H01_BE443312Td08P023A08P005H091R1_001.ab1   (46)   697     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  348 nodes

 176 str. conn. components

Path
    1  C MoSU018R_H01_BE443312Td08P023A08P005H091R1_001.ab1   743 
   50    MoSU018F_H01_BE443312Td08P023A08P005H091F1_001.ab1     4 
   54  C MoSU018R_H01_BE443312Td08P023A08P005H091R1_001.ab1   690 
   58    MoSU018F_H01_BE443312Td08P023A08P005H091F1_001.ab1    12 
   74  C MoSU018R_H01_BE443312Td08P023A08P005H091R1_001.ab1   670 
   90    MoSU018F_H01_BE443312Td08P023A08P005H091F1_001.ab1    44 
  526  C MoSU018R_H01_BE443312Td08P023A08P005H091R1_001.ab1   218 
  530    MoSU018F_H01_BE443312Td08P023A08P005H091F1_001.ab1   484 
  562  C MoSU018R_H01_BE443312Td08P023A08P005H091R1_001.ab1   182 
  570    MoSU018F_H01_BE443312Td08P023A08P005H091F1_001.ab1   524 
  574  C MoSU018R_H01_BE443312Td08P023A08P005H091R1_001.ab1   170 
  578    MoSU018F_H01_BE443312Td08P023A08P005H091F1_001.ab1   532 
  602  C MoSU018R_H01_BE443312Td08P023A08P005H091R1_001.ab1   142 
  606    MoSU018F_H01_BE443312Td08P023A08P005H091F1_001.ab1   560 
  618  C MoSU018R_H01_BE443312Td08P023A08P005H091R1_001.ab1   126 
  622    MoSU018F_H01_BE443312Td08P023A08P005H091F1_001.ab1   576 
  638  C MoSU018R_H01_BE443312Td08P023A08P005H091R1_001.ab1   106 
  646    MoSU018F_H01_BE443312Td08P023A08P005H091F1_001.ab1   600 
  666  C MoSU018R_H01_BE443312Td08P023A08P005H091R1_001.ab1    78 
  690    MoSU018F_H01_BE443312Td08P023A08P005H091F1_001.ab1   644 
  694  C MoSU018R_H01_BE443312Td08P023A08P005H091R1_001.ab1    50 
  718    MoSU018F_H01_BE443312Td08P023A08P005H091F1_001.ab1   672 
Contig length: old 784, new 785

Contig length: old 785, new 785
New start: 0