No. words: 1343; after pruning: 1317


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.7 (1,1:676)  610  0.00 0.00 0.00  MoSU018F_A02_BE443312Td09P023A08P005H091F1_016.ab1        1   617 (0)  C MoSU018R_A02_BE443312Td09P023A08P005H091R1_016.ab1   (49)   677    61 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  308 nodes

 156 str. conn. components

Path
    1  C MoSU018R_A02_BE443312Td09P023A08P005H091R1_016.ab1   726 
   70    MoSU018F_A02_BE443312Td09P023A08P005H091F1_016.ab1    21 
   74  C MoSU018R_A02_BE443312Td09P023A08P005H091R1_016.ab1   653 
  102    MoSU018F_A02_BE443312Td09P023A08P005H091F1_016.ab1    53 
  122  C MoSU018R_A02_BE443312Td09P023A08P005H091R1_016.ab1   605 
  126    MoSU018F_A02_BE443312Td09P023A08P005H091F1_016.ab1    77 
  138  C MoSU018R_A02_BE443312Td09P023A08P005H091R1_016.ab1   589 
  146    MoSU018F_A02_BE443312Td09P023A08P005H091F1_016.ab1    97 
  154  C MoSU018R_A02_BE443312Td09P023A08P005H091R1_016.ab1   573 
  170    MoSU018F_A02_BE443312Td09P023A08P005H091F1_016.ab1   121 
  466  C MoSU018R_A02_BE443312Td09P023A08P005H091R1_016.ab1   261 
  474    MoSU018F_A02_BE443312Td09P023A08P005H091F1_016.ab1   425 
  502  C MoSU018R_A02_BE443312Td09P023A08P005H091R1_016.ab1   225 
  510    MoSU018F_A02_BE443312Td09P023A08P005H091F1_016.ab1   461 
  526  C MoSU018R_A02_BE443312Td09P023A08P005H091R1_016.ab1   201 
  534    MoSU018F_A02_BE443312Td09P023A08P005H091F1_016.ab1   485 
  554  C MoSU018R_A02_BE443312Td09P023A08P005H091R1_016.ab1   173 
  558    MoSU018F_A02_BE443312Td09P023A08P005H091F1_016.ab1   509 
  562  C MoSU018R_A02_BE443312Td09P023A08P005H091R1_016.ab1   165 
  574    MoSU018F_A02_BE443312Td09P023A08P005H091F1_016.ab1   525 
  598  C MoSU018R_A02_BE443312Td09P023A08P005H091R1_016.ab1   129 
  630    MoSU018F_A02_BE443312Td09P023A08P005H091F1_016.ab1   581 
  634  C MoSU018R_A02_BE443312Td09P023A08P005H091R1_016.ab1    93 
  650    MoSU018F_A02_BE443312Td09P023A08P005H091F1_016.ab1   601 
  654  C MoSU018R_A02_BE443312Td09P023A08P005H091R1_016.ab1    73 
Contig length: old 726, new 726

Contig length: old 726, new 726
New start: 0