No. words: 1398; after pruning: 1372


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.7 (1,1:824)  567  0.00 0.00 0.00  MoSU003F_A07_BE443312Tu01P005H03H091F1_049.ab1      140   712 (0)  C MoSU003R_A07_BE443312Tu01P005H03H091R1_049.ab1   (0)   686   114 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  288 nodes

 146 str. conn. components

Path
    1    MoSU003F_A07_BE443312Tu01P005H03H091F1_049.ab1     1 
  471  C MoSU003R_A07_BE443312Tu01P005H03H091R1_049.ab1   355 
  475    MoSU003F_A07_BE443312Tu01P005H03H091F1_049.ab1   475 
  491  C MoSU003R_A07_BE443312Tu01P005H03H091R1_049.ab1   335 
  499    MoSU003F_A07_BE443312Tu01P005H03H091F1_049.ab1   499 
  507  C MoSU003R_A07_BE443312Tu01P005H03H091R1_049.ab1   319 
  515    MoSU003F_A07_BE443312Tu01P005H03H091F1_049.ab1   515 
  519  C MoSU003R_A07_BE443312Tu01P005H03H091R1_049.ab1   307 
  523    MoSU003F_A07_BE443312Tu01P005H03H091F1_049.ab1   523 
  531  C MoSU003R_A07_BE443312Tu01P005H03H091R1_049.ab1   295 
  543    MoSU003F_A07_BE443312Tu01P005H03H091F1_049.ab1   543 
  547  C MoSU003R_A07_BE443312Tu01P005H03H091R1_049.ab1   279 
  571    MoSU003F_A07_BE443312Tu01P005H03H091F1_049.ab1   571 
  575  C MoSU003R_A07_BE443312Tu01P005H03H091R1_049.ab1   251 
Contig length: old 825, new 825

Contig length: old 825, new 825
New start: 0