No. words: 1064; after pruning: 1038


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 6.4 (1,1:364)  354  0.00 0.28 0.00  MoSU023F_G07_BE443436Ld01P019F02P019F081F1_051.ab1        5   365 (168)  C MoSU023R_G07_BE443436Ld01P019F02P019F081R1_051.ab1   (169)   362     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  180 nodes

 92 str. conn. components

Path
    1  C MoSU023R_G07_BE443436Ld01P019F02P019F081R1_051.ab1   531 
  216    MoSU023F_G07_BE443436Ld01P019F02P019F081F1_051.ab1    50 
  292  C MoSU023R_G07_BE443436Ld01P019F02P019F081R1_051.ab1   240 
  332    MoSU023F_G07_BE443436Ld01P019F02P019F081F1_051.ab1   166 
  484  C MoSU023R_G07_BE443436Ld01P019F02P019F081R1_051.ab1    48 
  488    MoSU023F_G07_BE443436Ld01P019F02P019F081F1_051.ab1   322 
Contig length: old 699, new 699

Contig length: old 699, new 699
New start: 0