No. words: 1054; after pruning: 1028


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.8 (1,1:362)  357  0.00 0.28 0.00  MoSU023F_H07_BE443436Ld02P019F02P019F081F1_049.ab1        1   363 (160)  C MoSU023R_H07_BE443436Ld02P019F02P019F081R1_049.ab1   (167)   364     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  180 nodes

 92 str. conn. components

Path
    1  C MoSU023R_H07_BE443436Ld02P019F02P019F081R1_049.ab1   531 
  218    MoSU023F_H07_BE443436Ld02P019F02P019F081F1_049.ab1    50 
  254  C MoSU023R_H07_BE443436Ld02P019F02P019F081R1_049.ab1   278 
  258    MoSU023F_H07_BE443436Ld02P019F02P019F081F1_049.ab1    90 
  270  C MoSU023R_H07_BE443436Ld02P019F02P019F081R1_049.ab1   262 
  330    MoSU023F_H07_BE443436Ld02P019F02P019F081F1_049.ab1   162 
Contig length: old 691, new 691

Contig length: old 691, new 691
New start: 0