No. words: 1055; after pruning: 1029


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.9 (1,1:355)  353  0.00 0.00 0.00  MoSU023F_A08_BE443436Ld03P019F02P019F081F1_064.ab1        1   356 (171)  C MoSU023R_A08_BE443436Ld03P019F02P019F081R1_064.ab1   (172)   356     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  178 nodes

 91 str. conn. components

Path
    1  C MoSU023R_A08_BE443436Ld03P019F02P019F081R1_064.ab1   528 
  364    MoSU023F_A08_BE443436Ld03P019F02P019F081F1_064.ab1   192 
  368  C MoSU023R_A08_BE443436Ld03P019F02P019F081R1_064.ab1   161 
  376    MoSU023F_A08_BE443436Ld03P019F02P019F081F1_064.ab1   204 
  388  C MoSU023R_A08_BE443436Ld03P019F02P019F081R1_064.ab1   141 
  424    MoSU023F_A08_BE443436Ld03P019F02P019F081F1_064.ab1   252 
  452  C MoSU023R_A08_BE443436Ld03P019F02P019F081R1_064.ab1    77 
  472    MoSU023F_A08_BE443436Ld03P019F02P019F081F1_064.ab1   300 
  476  C MoSU023R_A08_BE443436Ld03P019F02P019F081R1_064.ab1    53 
  488    MoSU023F_A08_BE443436Ld03P019F02P019F081F1_064.ab1   316 
  500  C MoSU023R_A08_BE443436Ld03P019F02P019F081R1_064.ab1    29 
  504    MoSU023F_A08_BE443436Ld03P019F02P019F081F1_064.ab1   332 
Contig length: old 699, new 699

Contig length: old 699, new 699
New start: 0