No. words: 1061; after pruning: 1035


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 7.7 (1,1:372)  368  0.00 0.00 0.00  MoSU023F_F08_BE443436Ld08P019F02P019F081F1_054.ab1        1   372 (157)  C MoSU023R_F08_BE443436Ld08P019F02P019F081R1_054.ab1   (159)   373     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  188 nodes

 96 str. conn. components

Path
    1  C MoSU023R_F08_BE443436Ld08P019F02P019F081R1_054.ab1   532 
  395    MoSU023F_F08_BE443436Ld08P019F02P019F081F1_054.ab1   236 
Contig length: old 688, new 688

Contig length: old 688, new 688
New start: 0