No. words: 1203; after pruning: 1177


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.4 (1,1:473)  461  0.21 0.00 0.00  MoSU006F_A02_BE443554Ld03P015A04A101F1_005.ab1        1   474 (131)  C MoSU006R_A02_BE443554Ld03P015A04A101R1_005.ab1   (124)   474     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C MoSU006R_A02_BE443554Ld03P015A04A101R1_005.ab1   598 
  186    MoSU006F_A02_BE443554Ld03P015A04A101F1_005.ab1    62 
  190  C MoSU006R_A02_BE443554Ld03P015A04A101R1_005.ab1   409 
  238    MoSU006F_A02_BE443554Ld03P015A04A101F1_005.ab1   114 
  242  C MoSU006R_A02_BE443554Ld03P015A04A101R1_005.ab1   357 
  250    MoSU006F_A02_BE443554Ld03P015A04A101F1_005.ab1   126 
  254  C MoSU006R_A02_BE443554Ld03P015A04A101R1_005.ab1   345 
  274    MoSU006F_A02_BE443554Ld03P015A04A101F1_005.ab1   150 
  282  C MoSU006R_A02_BE443554Ld03P015A04A101R1_005.ab1   317 
  294    MoSU006F_A02_BE443554Ld03P015A04A101F1_005.ab1   170 
  302  C MoSU006R_A02_BE443554Ld03P015A04A101R1_005.ab1   297 
  334    MoSU006F_A02_BE443554Ld03P015A04A101F1_005.ab1   210 
  338  C MoSU006R_A02_BE443554Ld03P015A04A101R1_005.ab1   261 
  342    MoSU006F_A02_BE443554Ld03P015A04A101F1_005.ab1   218 
  382  C MoSU006R_A02_BE443554Ld03P015A04A101R1_005.ab1   217 
  410    MoSU006F_A02_BE443554Ld03P015A04A101F1_005.ab1   286 
  430  C MoSU006R_A02_BE443554Ld03P015A04A101R1_005.ab1   169 
  434    MoSU006F_A02_BE443554Ld03P015A04A101F1_005.ab1   310 
  450  C MoSU006R_A02_BE443554Ld03P015A04A101R1_005.ab1   149 
  482    MoSU006F_A02_BE443554Ld03P015A04A101F1_005.ab1   358 
  486  C MoSU006R_A02_BE443554Ld03P015A04A101R1_005.ab1   113 
  510    MoSU006F_A02_BE443554Ld03P015A04A101F1_005.ab1   386 
  534  C MoSU006R_A02_BE443554Ld03P015A04A101R1_005.ab1    65 
  538    MoSU006F_A02_BE443554Ld03P015A04A101F1_005.ab1   414 
Contig length: old 729, new 729

Contig length: old 729, new 729
New start: 0