No. words: 1199; after pruning: 1173


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.4 (1,1:479)  458  0.00 0.21 0.42  MoSU002F_D11_BE443554Ld04P005B05B111F2_090.ab1        1   481 (123)  C MoSU002R_D11_BE443554Ld04P005B05B111R2_090.ab1   (115)   480     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1  C MoSU002R_D11_BE443554Ld04P005B05B111R2_090.ab1   595 
  160    MoSU002F_D11_BE443554Ld04P005B05B111F2_090.ab1    44 
  164  C MoSU002R_D11_BE443554Ld04P005B05B111R2_090.ab1   432 
  172    MoSU002F_D11_BE443554Ld04P005B05B111F2_090.ab1    56 
  184  C MoSU002R_D11_BE443554Ld04P005B05B111R2_090.ab1   412 
  196    MoSU002F_D11_BE443554Ld04P005B05B111F2_090.ab1    80 
  200  C MoSU002R_D11_BE443554Ld04P005B05B111R2_090.ab1   396 
  216    MoSU002F_D11_BE443554Ld04P005B05B111F2_090.ab1   100 
  232  C MoSU002R_D11_BE443554Ld04P005B05B111R2_090.ab1   364 
  236    MoSU002F_D11_BE443554Ld04P005B05B111F2_090.ab1   120 
  248  C MoSU002R_D11_BE443554Ld04P005B05B111R2_090.ab1   348 
  308    MoSU002F_D11_BE443554Ld04P005B05B111F2_090.ab1   192 
  328  C MoSU002R_D11_BE443554Ld04P005B05B111R2_090.ab1   268 
  340    MoSU002F_D11_BE443554Ld04P005B05B111F2_090.ab1   224 
  396  C MoSU002R_D11_BE443554Ld04P005B05B111R2_090.ab1   200 
  416    MoSU002F_D11_BE443554Ld04P005B05B111F2_090.ab1   300 
  540  C MoSU002R_D11_BE443554Ld04P005B05B111R2_090.ab1    56 
  544    MoSU002F_D11_BE443554Ld04P005B05B111F2_090.ab1   428 
  552  C MoSU002R_D11_BE443554Ld04P005B05B111R2_090.ab1    44 
  556    MoSU002F_D11_BE443554Ld04P005B05B111F2_090.ab1   440 
Contig length: old 719, new 720

Contig length: old 720, new 720
New start: 0