No. words: 1214; after pruning: 1188


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 9.2 (1,1:477)  458  0.21 0.21 0.00  MoSU006F_C02_BE443554Ld05P015A04A101F1_006.ab1        1   474 (128)  C MoSU006R_C02_BE443554Ld05P015A04A101R1_006.ab1   (133)   479     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1  C MoSU006R_C02_BE443554Ld05P015A04A101R1_006.ab1   612 
  177    MoSU006F_C02_BE443554Ld05P015A04A101F1_006.ab1    43 
  181  C MoSU006R_C02_BE443554Ld05P015A04A101R1_006.ab1   432 
  185    MoSU006F_C02_BE443554Ld05P015A04A101F1_006.ab1    51 
  189  C MoSU006R_C02_BE443554Ld05P015A04A101R1_006.ab1   424 
  201    MoSU006F_C02_BE443554Ld05P015A04A101F1_006.ab1    67 
  217  C MoSU006R_C02_BE443554Ld05P015A04A101R1_006.ab1   396 
  261    MoSU006F_C02_BE443554Ld05P015A04A101F1_006.ab1   127 
  269  C MoSU006R_C02_BE443554Ld05P015A04A101R1_006.ab1   344 
  357    MoSU006F_C02_BE443554Ld05P015A04A101F1_006.ab1   223 
  361  C MoSU006R_C02_BE443554Ld05P015A04A101R1_006.ab1   252 
  385    MoSU006F_C02_BE443554Ld05P015A04A101F1_006.ab1   251 
  393  C MoSU006R_C02_BE443554Ld05P015A04A101R1_006.ab1   220 
  405    MoSU006F_C02_BE443554Ld05P015A04A101F1_006.ab1   271 
  465  C MoSU006R_C02_BE443554Ld05P015A04A101R1_006.ab1   148 
  473    MoSU006F_C02_BE443554Ld05P015A04A101F1_006.ab1   339 
  485  C MoSU006R_C02_BE443554Ld05P015A04A101R1_006.ab1   128 
  489    MoSU006F_C02_BE443554Ld05P015A04A101F1_006.ab1   355 
Contig length: old 736, new 736

Contig length: old 736, new 736
New start: 0