No. words: 1405; after pruning: 1379


Histogram of relative pair offsets, for read pairs with multiple alignments:
40     2
42     2
82     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 11.6 (1,1:581)  555  0.00 0.00 0.52  MoSU006F_E02_BE443554Ld07P015A04A101F1_007.ab1        3   584 (123)  C MoSU006R_E02_BE443554Ld07P015A04A101R1_007.ab1   (119)   579     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1  C MoSU006R_E02_BE443554Ld07P015A04A101R1_007.ab1   698 
  131    MoSU006F_E02_BE443554Ld07P015A04A101F1_007.ab1    14 
  135  C MoSU006R_E02_BE443554Ld07P015A04A101R1_007.ab1   564 
  163    MoSU006F_E02_BE443554Ld07P015A04A101F1_007.ab1    46 
  171  C MoSU006R_E02_BE443554Ld07P015A04A101R1_007.ab1   528 
  175    MoSU006F_E02_BE443554Ld07P015A04A101F1_007.ab1    58 
  203  C MoSU006R_E02_BE443554Ld07P015A04A101R1_007.ab1   496 
  223    MoSU006F_E02_BE443554Ld07P015A04A101F1_007.ab1   106 
  227  C MoSU006R_E02_BE443554Ld07P015A04A101R1_007.ab1   472 
  639    MoSU006F_E02_BE443554Ld07P015A04A101F1_007.ab1   522 
  653  C MoSU006R_E02_BE443554Ld07P015A04A101R1_007.ab1    47 
  661    MoSU006F_E02_BE443554Ld07P015A04A101F1_007.ab1   544 
Contig length: old 823, new 824

Contig length: old 824, new 824
New start: 0