No. words: 1141; after pruning: 1115


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.8 (1,1:545)  507  1.47 0.00 0.00  MoSU006F_B01_BE443554Tu02P015A04A101F1_009.ab1        1   546 (23)  C MoSU006R_B01_BE443554Tu02P015A04A101R1_009.ab1   (26)   546     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  256 nodes

 130 str. conn. components

Path
    1  C MoSU006R_B01_BE443554Tu02P015A04A101R1_009.ab1   572 
   30    MoSU006F_B01_BE443554Tu02P015A04A101F1_009.ab1     4 
   46  C MoSU006R_B01_BE443554Tu02P015A04A101R1_009.ab1   527 
   50    MoSU006F_B01_BE443554Tu02P015A04A101F1_009.ab1    24 
   90  C MoSU006R_B01_BE443554Tu02P015A04A101R1_009.ab1   483 
  553    MoSU006F_B01_BE443554Tu02P015A04A101F1_009.ab1   527 
  565  C MoSU006R_B01_BE443554Tu02P015A04A101R1_009.ab1     8 
  569    MoSU006F_B01_BE443554Tu02P015A04A101F1_009.ab1   543 
Contig length: old 595, new 595

Contig length: old 595, new 595
New start: 0