No. words: 1026; after pruning: 1000


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.3 (1,1:384)  370  0.00 0.52 0.00  MoSU003F_G01_BE443572Ld01P005D01D071F1_004.ab1        1   384 (129)  C MoSU003R_G01_BE443572Ld01P005D01D071R1_004.ab1   (127)   386     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  188 nodes

 96 str. conn. components

Path
    1  C MoSU003R_G01_BE443572Ld01P005D01D071R1_004.ab1   513 
  195    MoSU003F_G01_BE443572Ld01P005D01D071F1_004.ab1    66 
  203  C MoSU003R_G01_BE443572Ld01P005D01D071R1_004.ab1   311 
  299    MoSU003F_G01_BE443572Ld01P005D01D071F1_004.ab1   170 
  303  C MoSU003R_G01_BE443572Ld01P005D01D071R1_004.ab1   211 
  331    MoSU003F_G01_BE443572Ld01P005D01D071F1_004.ab1   202 
  343  C MoSU003R_G01_BE443572Ld01P005D01D071R1_004.ab1   171 
  351    MoSU003F_G01_BE443572Ld01P005D01D071F1_004.ab1   222 
  375  C MoSU003R_G01_BE443572Ld01P005D01D071R1_004.ab1   139 
  379    MoSU003F_G01_BE443572Ld01P005D01D071F1_004.ab1   250 
  387  C MoSU003R_G01_BE443572Ld01P005D01D071R1_004.ab1   127 
  391    MoSU003F_G01_BE443572Ld01P005D01D071F1_004.ab1   262 
Contig length: old 641, new 642

Contig length: old 642, new 642
New start: 0