No. words: 1023; after pruning: 997


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.2 (1,1:376)  365  0.00 0.00 0.27  MoSU006F_B04_BE443572Ld04P015B04B101F1_029.ab1        1   377 (126)  C MoSU006R_B04_BE443572Ld04P015B04B101R1_029.ab1   (144)   376     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  188 nodes

 96 str. conn. components

Path
    1  C MoSU006R_B04_BE443572Ld04P015B04B101R1_029.ab1   520 
  304    MoSU006F_B04_BE443572Ld04P015B04B101F1_029.ab1   160 
  308  C MoSU006R_B04_BE443572Ld04P015B04B101R1_029.ab1   213 
  340    MoSU006F_B04_BE443572Ld04P015B04B101F1_029.ab1   196 
  344  C MoSU006R_B04_BE443572Ld04P015B04B101R1_029.ab1   177 
  368    MoSU006F_B04_BE443572Ld04P015B04B101F1_029.ab1   224 
  388  C MoSU006R_B04_BE443572Ld04P015B04B101R1_029.ab1   133 
  396    MoSU006F_B04_BE443572Ld04P015B04B101F1_029.ab1   252 
  448  C MoSU006R_B04_BE443572Ld04P015B04B101R1_029.ab1    73 
  456    MoSU006F_B04_BE443572Ld04P015B04B101F1_029.ab1   312 
Contig length: old 646, new 647

Contig length: old 647, new 647
New start: 0