No. words: 1030; after pruning: 1004


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 7.9 (1,1:384)  368  0.00 0.52 0.00  MoSU003F_C02_BE443572Ld05P005D01D071F1_006.ab1        3   384 (128)  C MoSU003R_C02_BE443572Ld05P005D01D071R1_006.ab1   (134)   384     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  188 nodes

 96 str. conn. components

Path
    1  C MoSU003R_C02_BE443572Ld05P005D01D071R1_006.ab1   518 
  194    MoSU003F_C02_BE443572Ld05P005D01D071F1_006.ab1    60 
  218  C MoSU003R_C02_BE443572Ld05P005D01D071R1_006.ab1   301 
  226    MoSU003F_C02_BE443572Ld05P005D01D071F1_006.ab1    92 
  230  C MoSU003R_C02_BE443572Ld05P005D01D071R1_006.ab1   289 
  238    MoSU003F_C02_BE443572Ld05P005D01D071F1_006.ab1   104 
  246  C MoSU003R_C02_BE443572Ld05P005D01D071R1_006.ab1   273 
  262    MoSU003F_C02_BE443572Ld05P005D01D071F1_006.ab1   128 
  270  C MoSU003R_C02_BE443572Ld05P005D01D071R1_006.ab1   249 
  318    MoSU003F_C02_BE443572Ld05P005D01D071F1_006.ab1   184 
  322  C MoSU003R_C02_BE443572Ld05P005D01D071R1_006.ab1   197 
  334    MoSU003F_C02_BE443572Ld05P005D01D071F1_006.ab1   200 
  342  C MoSU003R_C02_BE443572Ld05P005D01D071R1_006.ab1   177 
  354    MoSU003F_C02_BE443572Ld05P005D01D071F1_006.ab1   220 
  362  C MoSU003R_C02_BE443572Ld05P005D01D071R1_006.ab1   157 
  366    MoSU003F_C02_BE443572Ld05P005D01D071F1_006.ab1   232 
  382  C MoSU003R_C02_BE443572Ld05P005D01D071R1_006.ab1   137 
  386    MoSU003F_C02_BE443572Ld05P005D01D071F1_006.ab1   252 
  434  C MoSU003R_C02_BE443572Ld05P005D01D071R1_006.ab1    85 
  446    MoSU003F_C02_BE443572Ld05P005D01D071F1_006.ab1   312 
Contig length: old 645, new 646

Contig length: old 646, new 646
New start: 0