No. words: 1021; after pruning: 995


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.2 (1,1:373)  362  0.00 0.00 0.27  MoSU006F_C04_BE443572Ld05P015B04B101F1_022.ab1        1   374 (139)  C MoSU006R_C04_BE443572Ld05P015B04B101R1_022.ab1   (135)   373     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  186 nodes

 95 str. conn. components

Path
    1  C MoSU006R_C04_BE443572Ld05P015B04B101R1_022.ab1   508 
  251    MoSU006F_C04_BE443572Ld05P015B04B101F1_022.ab1   116 
  263  C MoSU006R_C04_BE443572Ld05P015B04B101R1_022.ab1   246 
  331    MoSU006F_C04_BE443572Ld05P015B04B101F1_022.ab1   196 
  339  C MoSU006R_C04_BE443572Ld05P015B04B101R1_022.ab1   170 
  347    MoSU006F_C04_BE443572Ld05P015B04B101F1_022.ab1   212 
  383  C MoSU006R_C04_BE443572Ld05P015B04B101R1_022.ab1   126 
  399    MoSU006F_C04_BE443572Ld05P015B04B101F1_022.ab1   264 
  435  C MoSU006R_C04_BE443572Ld05P015B04B101R1_022.ab1    74 
  447    MoSU006F_C04_BE443572Ld05P015B04B101F1_022.ab1   312 
Contig length: old 647, new 648

Contig length: old 648, new 648
New start: 0