No. words: 1021; after pruning: 995


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.9 (1,1:375)  364  0.00 0.00 0.27  MoSU006F_D04_BE443572Ld06P015B04B101F1_030.ab1        1   376 (127)  C MoSU006R_D04_BE443572Ld06P015B04B101R1_030.ab1   (143)   375     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  186 nodes

 95 str. conn. components

Path
    1  C MoSU006R_D04_BE443572Ld06P015B04B101R1_030.ab1   518 
  275    MoSU006F_D04_BE443572Ld06P015B04B101F1_030.ab1   132 
  279  C MoSU006R_D04_BE443572Ld06P015B04B101R1_030.ab1   240 
  339    MoSU006F_D04_BE443572Ld06P015B04B101F1_030.ab1   196 
  387  C MoSU006R_D04_BE443572Ld06P015B04B101R1_030.ab1   132 
  395    MoSU006F_D04_BE443572Ld06P015B04B101F1_030.ab1   252 
  431  C MoSU006R_D04_BE443572Ld06P015B04B101R1_030.ab1    88 
  439    MoSU006F_D04_BE443572Ld06P015B04B101F1_030.ab1   296 
  451  C MoSU006R_D04_BE443572Ld06P015B04B101R1_030.ab1    68 
  455    MoSU006F_D04_BE443572Ld06P015B04B101F1_030.ab1   312 
Contig length: old 645, new 646

Contig length: old 646, new 646
New start: 0