No. words: 1020; after pruning: 994


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.3 (1,1:375)  370  0.00 0.00 0.00  MoSU006F_E04_BE443572Ld07P015B04B101F1_023.ab1        1   376 (127)  C MoSU006R_E04_BE443572Ld07P015B04B101R1_023.ab1   (141)   376     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  188 nodes

 96 str. conn. components

Path
    1  C MoSU006R_E04_BE443572Ld07P015B04B101R1_023.ab1   517 
  249    MoSU006F_E04_BE443572Ld07P015B04B101F1_023.ab1   108 
  281  C MoSU006R_E04_BE443572Ld07P015B04B101R1_023.ab1   237 
  301    MoSU006F_E04_BE443572Ld07P015B04B101F1_023.ab1   160 
  305  C MoSU006R_E04_BE443572Ld07P015B04B101R1_023.ab1   213 
  341    MoSU006F_E04_BE443572Ld07P015B04B101F1_023.ab1   200 
  345  C MoSU006R_E04_BE443572Ld07P015B04B101R1_023.ab1   173 
  349    MoSU006F_E04_BE443572Ld07P015B04B101F1_023.ab1   208 
  385  C MoSU006R_E04_BE443572Ld07P015B04B101R1_023.ab1   133 
  405    MoSU006F_E04_BE443572Ld07P015B04B101F1_023.ab1   264 
  445  C MoSU006R_E04_BE443572Ld07P015B04B101R1_023.ab1    73 
  457    MoSU006F_E04_BE443572Ld07P015B04B101F1_023.ab1   316 
Contig length: old 644, new 644

Contig length: old 644, new 644
New start: 0