No. words: 462; after pruning: 436


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.7 (1,1:174)  165  0.00 0.00 0.57  MoSU029F_C04_BE443572Ta13P005D01P023B061F1_028.ab1        1   175 (56)  C MoSU029R_C04_BE443572Ta13P005D01P023B061R1_028.ab1   (57)   174     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  84 nodes

 44 str. conn. components

Path
    1  C MoSU029R_C04_BE443572Ta13P005D01P023B061R1_028.ab1   231 
  103    MoSU029F_C04_BE443572Ta13P005D01P023B061F1_028.ab1    46 
  123  C MoSU029R_C04_BE443572Ta13P005D01P023B061R1_028.ab1   109 
  159    MoSU029F_C04_BE443572Ta13P005D01P023B061F1_028.ab1   102 
  203  C MoSU029R_C04_BE443572Ta13P005D01P023B061R1_028.ab1    29 
  207    MoSU029F_C04_BE443572Ta13P005D01P023B061F1_028.ab1   150 
Contig length: old 287, new 288

Contig length: old 288, new 288
New start: 0