No. words: 1410; after pruning: 1384


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 14.0 (1,1:666)  651  0.00 0.00 0.00  MoSU023F_D05_BE443596As02P019D02P019D081F1_041.ab1        4   667 (38)  C MoSU023R_D05_BE443596As02P019D02P019D081R1_041.ab1   (41)   664     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  330 nodes

 167 str. conn. components

Path
    1  C MoSU023R_D05_BE443596As02P019D02P019D081R1_041.ab1   705 
  101    MoSU023F_D05_BE443596As02P019D02P019D081F1_041.ab1    63 
  113  C MoSU023R_D05_BE443596As02P019D02P019D081R1_041.ab1   593 
  597    MoSU023F_D05_BE443596As02P019D02P019D081F1_041.ab1   559 
  601  C MoSU023R_D05_BE443596As02P019D02P019D081R1_041.ab1   105 
  613    MoSU023F_D05_BE443596As02P019D02P019D081F1_041.ab1   575 
  625  C MoSU023R_D05_BE443596As02P019D02P019D081R1_041.ab1    81 
  629    MoSU023F_D05_BE443596As02P019D02P019D081F1_041.ab1   591 
  633  C MoSU023R_D05_BE443596As02P019D02P019D081R1_041.ab1    73 
  673    MoSU023F_D05_BE443596As02P019D02P019D081F1_041.ab1   635 
  677  C MoSU023R_D05_BE443596As02P019D02P019D081R1_041.ab1    29 
  689    MoSU023F_D05_BE443596As02P019D02P019D081F1_041.ab1   651 
Contig length: old 743, new 743

Contig length: old 743, new 743
New start: 0