No. words: 1389; after pruning: 1363


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 13.4 (1,1:660)  638  0.00 0.00 0.15  MoSU023F_E05_BE443596At01P019D02P019D081F1_039.ab1        4   661 (30)  C MoSU023R_E05_BE443596At01P019D02P019D081R1_039.ab1   (41)   657     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  328 nodes

 166 str. conn. components

Path
    1  C MoSU023R_E05_BE443596At01P019D02P019D081R1_039.ab1   698 
   69    MoSU023F_E05_BE443596At01P019D02P019D081F1_039.ab1    31 
   73  C MoSU023R_E05_BE443596At01P019D02P019D081R1_039.ab1   626 
   89    MoSU023F_E05_BE443596At01P019D02P019D081F1_039.ab1    51 
   93  C MoSU023R_E05_BE443596At01P019D02P019D081R1_039.ab1   606 
   97    MoSU023F_E05_BE443596At01P019D02P019D081F1_039.ab1    59 
  101  C MoSU023R_E05_BE443596At01P019D02P019D081R1_039.ab1   598 
  105    MoSU023F_E05_BE443596At01P019D02P019D081F1_039.ab1    67 
  121  C MoSU023R_E05_BE443596At01P019D02P019D081R1_039.ab1   578 
  137    MoSU023F_E05_BE443596At01P019D02P019D081F1_039.ab1    99 
  485  C MoSU023R_E05_BE443596At01P019D02P019D081R1_039.ab1   214 
  521    MoSU023F_E05_BE443596At01P019D02P019D081F1_039.ab1   483 
  537  C MoSU023R_E05_BE443596At01P019D02P019D081R1_039.ab1   162 
  573    MoSU023F_E05_BE443596At01P019D02P019D081F1_039.ab1   535 
  577  C MoSU023R_E05_BE443596At01P019D02P019D081R1_039.ab1   122 
  585    MoSU023F_E05_BE443596At01P019D02P019D081F1_039.ab1   547 
  597  C MoSU023R_E05_BE443596At01P019D02P019D081R1_039.ab1   102 
  605    MoSU023F_E05_BE443596At01P019D02P019D081F1_039.ab1   567 
  609  C MoSU023R_E05_BE443596At01P019D02P019D081R1_039.ab1    90 
  617    MoSU023F_E05_BE443596At01P019D02P019D081F1_039.ab1   579 
  625  C MoSU023R_E05_BE443596At01P019D02P019D081R1_039.ab1    74 
  641    MoSU023F_E05_BE443596At01P019D02P019D081F1_039.ab1   603 
  653  C MoSU023R_E05_BE443596At01P019D02P019D081R1_039.ab1    46 
  665    MoSU023F_E05_BE443596At01P019D02P019D081F1_039.ab1   627 
  669  C MoSU023R_E05_BE443596At01P019D02P019D081R1_039.ab1    30 
  677    MoSU023F_E05_BE443596At01P019D02P019D081F1_039.ab1   639 
  681  C MoSU023R_E05_BE443596At01P019D02P019D081R1_039.ab1    18 
  685    MoSU023F_E05_BE443596At01P019D02P019D081F1_039.ab1   647 
Contig length: old 728, new 729

Contig length: old 729, new 729
New start: 0