No. words: 1618; after pruning: 1592


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 13.3 (1,1:651)  635  0.00 0.00 0.00  MoSU023F_A06_BE443596Ld03P019D02P019D081F1_048.ab1        4   652 (160)  C MoSU023R_A06_BE443596Ld03P019D02P019D081R1_048.ab1   (157)   649     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  324 nodes

 164 str. conn. components

Path
    1  C MoSU023R_A06_BE443596Ld03P019D02P019D081R1_048.ab1   806 
  173    MoSU023F_A06_BE443596Ld03P019D02P019D081F1_048.ab1    19 
  193  C MoSU023R_A06_BE443596Ld03P019D02P019D081R1_048.ab1   614 
  401    MoSU023F_A06_BE443596Ld03P019D02P019D081F1_048.ab1   247 
  489  C MoSU023R_A06_BE443596Ld03P019D02P019D081R1_048.ab1   318 
  537    MoSU023F_A06_BE443596Ld03P019D02P019D081F1_048.ab1   383 
  557  C MoSU023R_A06_BE443596Ld03P019D02P019D081R1_048.ab1   250 
  661    MoSU023F_A06_BE443596Ld03P019D02P019D081F1_048.ab1   507 
  705  C MoSU023R_A06_BE443596Ld03P019D02P019D081R1_048.ab1   102 
  721    MoSU023F_A06_BE443596Ld03P019D02P019D081F1_048.ab1   567 
  729  C MoSU023R_A06_BE443596Ld03P019D02P019D081R1_048.ab1    78 
  737    MoSU023F_A06_BE443596Ld03P019D02P019D081F1_048.ab1   583 
  741  C MoSU023R_A06_BE443596Ld03P019D02P019D081R1_048.ab1    66 
  793    MoSU023F_A06_BE443596Ld03P019D02P019D081F1_048.ab1   639 
Contig length: old 966, new 966

Contig length: old 966, new 966
New start: 0