No. words: 1621; after pruning: 1595


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.1 (1,1:656)  639  0.00 0.15 0.00  MoSU023F_C06_BE443596Ld05P019D02P019D081F1_044.ab1        1   657 (152)  C MoSU023R_C06_BE443596Ld05P019D02P019D081R1_044.ab1   (154)   658     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  324 nodes

 164 str. conn. components

Path
    1  C MoSU023R_C06_BE443596Ld05P019D02P019D081R1_044.ab1   812 
  211    MoSU023F_C06_BE443596Ld05P019D02P019D081F1_044.ab1    56 
  215  C MoSU023R_C06_BE443596Ld05P019D02P019D081R1_044.ab1   598 
  259    MoSU023F_C06_BE443596Ld05P019D02P019D081F1_044.ab1   104 
  263  C MoSU023R_C06_BE443596Ld05P019D02P019D081R1_044.ab1   550 
  295    MoSU023F_C06_BE443596Ld05P019D02P019D081F1_044.ab1   140 
  303  C MoSU023R_C06_BE443596Ld05P019D02P019D081R1_044.ab1   510 
  343    MoSU023F_C06_BE443596Ld05P019D02P019D081F1_044.ab1   188 
  463  C MoSU023R_C06_BE443596Ld05P019D02P019D081R1_044.ab1   350 
  531    MoSU023F_C06_BE443596Ld05P019D02P019D081F1_044.ab1   376 
  559  C MoSU023R_C06_BE443596Ld05P019D02P019D081R1_044.ab1   254 
  611    MoSU023F_C06_BE443596Ld05P019D02P019D081F1_044.ab1   456 
  647  C MoSU023R_C06_BE443596Ld05P019D02P019D081R1_044.ab1   166 
  667    MoSU023F_C06_BE443596Ld05P019D02P019D081F1_044.ab1   512 
  755  C MoSU023R_C06_BE443596Ld05P019D02P019D081R1_044.ab1    58 
  767    MoSU023F_C06_BE443596Ld05P019D02P019D081F1_044.ab1   612 
  771  C MoSU023R_C06_BE443596Ld05P019D02P019D081R1_044.ab1    42 
  783    MoSU023F_C06_BE443596Ld05P019D02P019D081F1_044.ab1   628 
  795  C MoSU023R_C06_BE443596Ld05P019D02P019D081R1_044.ab1    18 
  803    MoSU023F_C06_BE443596Ld05P019D02P019D081F1_044.ab1   648 
Contig length: old 964, new 964

Contig length: old 964, new 964
New start: 0