No. words: 1624; after pruning: 1598


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.1 (1,1:656)  640  0.00 0.15 0.00  MoSU023F_E06_BE443596Ld07P019D02P019D081F1_040.ab1        1   657 (151)  C MoSU023R_E06_BE443596Ld07P019D02P019D081R1_040.ab1   (158)   658     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  324 nodes

 164 str. conn. components

Path
    1  C MoSU023R_E06_BE443596Ld07P019D02P019D081R1_040.ab1   816 
  215    MoSU023F_E06_BE443596Ld07P019D02P019D081F1_040.ab1    56 
  219  C MoSU023R_E06_BE443596Ld07P019D02P019D081R1_040.ab1   598 
  547    MoSU023F_E06_BE443596Ld07P019D02P019D081F1_040.ab1   388 
  563  C MoSU023R_E06_BE443596Ld07P019D02P019D081R1_040.ab1   254 
  623    MoSU023F_E06_BE443596Ld07P019D02P019D081F1_040.ab1   464 
  631  C MoSU023R_E06_BE443596Ld07P019D02P019D081R1_040.ab1   186 
  639    MoSU023F_E06_BE443596Ld07P019D02P019D081F1_040.ab1   480 
  651  C MoSU023R_E06_BE443596Ld07P019D02P019D081R1_040.ab1   166 
  671    MoSU023F_E06_BE443596Ld07P019D02P019D081F1_040.ab1   512 
  735  C MoSU023R_E06_BE443596Ld07P019D02P019D081R1_040.ab1    82 
  747    MoSU023F_E06_BE443596Ld07P019D02P019D081F1_040.ab1   588 
  755  C MoSU023R_E06_BE443596Ld07P019D02P019D081R1_040.ab1    62 
  803    MoSU023F_E06_BE443596Ld07P019D02P019D081F1_040.ab1   644 
Contig length: old 967, new 967

Contig length: old 967, new 967
New start: 0