No. words: 1623; after pruning: 1597


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 12.8 (1,1:655)  637  0.00 0.15 0.00  MoSU023F_G06_BE443596Ld09P019D02P019D081F1_036.ab1        1   655 (163)  C MoSU023R_G06_BE443596Ld09P019D02P019D081R1_036.ab1   (148)   657     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  324 nodes

 164 str. conn. components

Path
    1  C MoSU023R_G06_BE443596Ld09P019D02P019D081R1_036.ab1   805 
  213    MoSU023F_G06_BE443596Ld09P019D02P019D081F1_036.ab1    64 
  225  C MoSU023R_G06_BE443596Ld09P019D02P019D081R1_036.ab1   581 
  229    MoSU023F_G06_BE443596Ld09P019D02P019D081F1_036.ab1    80 
  237  C MoSU023R_G06_BE443596Ld09P019D02P019D081R1_036.ab1   569 
  525    MoSU023F_G06_BE443596Ld09P019D02P019D081F1_036.ab1   376 
  533  C MoSU023R_G06_BE443596Ld09P019D02P019D081R1_036.ab1   273 
  605    MoSU023F_G06_BE443596Ld09P019D02P019D081F1_036.ab1   456 
  633  C MoSU023R_G06_BE443596Ld09P019D02P019D081R1_036.ab1   173 
  665    MoSU023F_G06_BE443596Ld09P019D02P019D081F1_036.ab1   516 
  673  C MoSU023R_G06_BE443596Ld09P019D02P019D081R1_036.ab1   133 
  697    MoSU023F_G06_BE443596Ld09P019D02P019D081F1_036.ab1   548 
  713  C MoSU023R_G06_BE443596Ld09P019D02P019D081R1_036.ab1    93 
  721    MoSU023F_G06_BE443596Ld09P019D02P019D081F1_036.ab1   572 
  745  C MoSU023R_G06_BE443596Ld09P019D02P019D081R1_036.ab1    61 
  757    MoSU023F_G06_BE443596Ld09P019D02P019D081F1_036.ab1   608 
  769  C MoSU023R_G06_BE443596Ld09P019D02P019D081R1_036.ab1    37 
  793    MoSU023F_G06_BE443596Ld09P019D02P019D081F1_036.ab1   644 
Contig length: old 967, new 967

Contig length: old 967, new 967
New start: 0