No. words: 1396; after pruning: 1370


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 12.4 (1,1:654)  635  0.15 0.00 0.00  MoSU023F_A05_BE443596Tu01P019D02P019D081F1_047.ab1        4   654 (46)  C MoSU023R_A05_BE443596Tu01P019D02P019D081R1_047.ab1   (44)   652     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  324 nodes

 164 str. conn. components

Path
    1  C MoSU023R_A05_BE443596Tu01P019D02P019D081R1_047.ab1   696 
  160    MoSU023F_A05_BE443596Tu01P019D02P019D081F1_047.ab1   119 
  188  C MoSU023R_A05_BE443596Tu01P019D02P019D081R1_047.ab1   509 
  276    MoSU023F_A05_BE443596Tu01P019D02P019D081F1_047.ab1   235 
  364  C MoSU023R_A05_BE443596Tu01P019D02P019D081R1_047.ab1   333 
  432    MoSU023F_A05_BE443596Tu01P019D02P019D081F1_047.ab1   391 
  512  C MoSU023R_A05_BE443596Tu01P019D02P019D081R1_047.ab1   185 
  548    MoSU023F_A05_BE443596Tu01P019D02P019D081F1_047.ab1   507 
  600  C MoSU023R_A05_BE443596Tu01P019D02P019D081R1_047.ab1    97 
  608    MoSU023F_A05_BE443596Tu01P019D02P019D081F1_047.ab1   567 
  632  C MoSU023R_A05_BE443596Tu01P019D02P019D081R1_047.ab1    65 
  636    MoSU023F_A05_BE443596Tu01P019D02P019D081F1_047.ab1   595 
  640  C MoSU023R_A05_BE443596Tu01P019D02P019D081R1_047.ab1    57 
  656    MoSU023F_A05_BE443596Tu01P019D02P019D081F1_047.ab1   615 
Contig length: old 741, new 741

Contig length: old 741, new 741
New start: 0 
S Change at: 690; seg lengths: entry 1, contig 1