No. words: 1396; after pruning: 1370


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 13.8 (1,1:655)  641  0.00 0.00 0.00  MoSU023F_B05_BE443596Tu02P019D02P019D081F1_045.ab1        4   656 (43)  C MoSU023R_B05_BE443596Tu02P019D02P019D081R1_045.ab1   (44)   653     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  324 nodes

 164 str. conn. components

Path
    1  C MoSU023R_B05_BE443596Tu02P019D02P019D081R1_045.ab1   697 
  340    MoSU023F_B05_BE443596Tu02P019D02P019D081F1_045.ab1   299 
  348  C MoSU023R_B05_BE443596Tu02P019D02P019D081R1_045.ab1   350 
  432    MoSU023F_B05_BE443596Tu02P019D02P019D081F1_045.ab1   391 
  508  C MoSU023R_B05_BE443596Tu02P019D02P019D081R1_045.ab1   190 
  552    MoSU023F_B05_BE443596Tu02P019D02P019D081F1_045.ab1   511 
  556  C MoSU023R_B05_BE443596Tu02P019D02P019D081R1_045.ab1   142 
  584    MoSU023F_B05_BE443596Tu02P019D02P019D081F1_045.ab1   543 
  616  C MoSU023R_B05_BE443596Tu02P019D02P019D081R1_045.ab1    82 
  624    MoSU023F_B05_BE443596Tu02P019D02P019D081F1_045.ab1   583 
  628  C MoSU023R_B05_BE443596Tu02P019D02P019D081R1_045.ab1    70 
  668    MoSU023F_B05_BE443596Tu02P019D02P019D081F1_045.ab1   627 
  680  C MoSU023R_B05_BE443596Tu02P019D02P019D081R1_045.ab1    18 
  684    MoSU023F_B05_BE443596Tu02P019D02P019D081F1_045.ab1   643 
Contig length: old 740, new 740

Contig length: old 740, new 740
New start: 0