No. words: 732; after pruning: 706


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    2   -4.5 -4.5 (1,1:370)   38 21.30 0.00 0.00  MoSU006F_B12_BE443936Ld03P015C04C101F1_093.ab1      262   369 (253)  C MoSU006R_B12_BE443936Ld03P015C04C101R1_093.ab1   (0)   110     3 *
  Worst pair: offset 0 
LLR breakdown: discreps: -6.0 (<20 part: -6.0 (#=23), >20:0.0 (#=0); in HQ: -6.0, out HQ 0.0), match: 1.9  trail: -0.4  total: -4.5   38 21.30 0.00 0.00  MoSU006F_B12_BE443936Ld03P015C04C101F1_093.ab1      262   369 (253)  C MoSU006R_B12_BE443936Ld03P015C04C101R1_093.ab1   (0)   110     3 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.5       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  18 nodes

 11 str. conn. components

Path
    1    MoSU006F_B12_BE443936Ld03P015C04C101F1_093.ab1     1 
Contig length: old 622, new 622

Contig length: old 622, new 622
New start: 0