No. words: 613; after pruning: 587


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -3.8 -3.8 (1,1:258)  127 15.44 0.39 0.39  MoSU011F_D11_BE443936Ta23P020D04P005A081F1_089.ab1        1   259 (65)  C MoSU011R_D11_BE443936Ta23P020D04P005A081R1_089.ab1   (30)   259     1 *
  Worst pair: offset 0 
LLR breakdown: discreps: -8.7 (<20 part: -8.7 (#=42), >20:0.0 (#=0); in HQ: -8.7, out HQ 0.0), match: 4.9  total: -3.8  127 15.44 0.39 0.39  MoSU011F_D11_BE443936Ta23P020D04P005A081F1_089.ab1        1   259 (65)  C MoSU011R_D11_BE443936Ta23P020D04P005A081R1_089.ab1   (30)   259     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.8       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  56 nodes

 30 str. conn. components

Path
    1  C MoSU011R_D11_BE443936Ta23P020D04P005A081R1_089.ab1   289 
   34    MoSU011F_D11_BE443936Ta23P020D04P005A081F1_089.ab1     4 
   38  C MoSU011R_D11_BE443936Ta23P020D04P005A081R1_089.ab1   252 
   46    MoSU011F_D11_BE443936Ta23P020D04P005A081F1_089.ab1    16 
  128  C MoSU011R_D11_BE443936Ta23P020D04P005A081R1_089.ab1   162 
  256    MoSU011F_D11_BE443936Ta23P020D04P005A081F1_089.ab1   226 
  260  C MoSU011R_D11_BE443936Ta23P020D04P005A081R1_089.ab1    30 
  264    MoSU011F_D11_BE443936Ta23P020D04P005A081F1_089.ab1   234 
  268  C MoSU011R_D11_BE443936Ta23P020D04P005A081R1_089.ab1    22 
  272    MoSU011F_D11_BE443936Ta23P020D04P005A081F1_089.ab1   242 
  276  C MoSU011R_D11_BE443936Ta23P020D04P005A081R1_089.ab1    14 
  280    MoSU011F_D11_BE443936Ta23P020D04P005A081F1_089.ab1   250 
Contig length: old 354, new 354

Contig length: old 354, new 354
New start: 0 
S Change at: 63; seg lengths: entry 5, contig 5
S Change at: 105; seg lengths: entry 20, contig 20
S Change at: 286; seg lengths: entry 1, contig 1