No. words: 711; after pruning: 685


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   64    0.0 1.2 (1,1:352)  217  4.05 0.00 0.00  MoSU011F_A04_BE443936Td04P005A02P020A041F1_032.ab1       95   341 (47)  C MoSU011R_A04_BE443936Td04P005A02P020A041R1_032.ab1   (64)   259    13 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
64       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  100 nodes

 52 str. conn. components

Path
    1    MoSU011F_A04_BE443936Td04P005A02P020A041F1_032.ab1     1 
  187  C MoSU011R_A04_BE443936Td04P005A02P020A041R1_032.ab1   167 
  191    MoSU011F_A04_BE443936Td04P005A02P020A041F1_032.ab1   191 
  207  C MoSU011R_A04_BE443936Td04P005A02P020A041R1_032.ab1   147 
  309    MoSU011F_A04_BE443936Td04P005A02P020A041F1_032.ab1   309 
  321  C MoSU011R_A04_BE443936Td04P005A02P020A041R1_032.ab1    33 
Contig length: old 388, new 353

Contig length: old 353, new 353
New start: 0 
S Change at: 272; seg lengths: entry 4, contig 4