No. words: 574; after pruning: 548


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   27    0.0 2.1 (1,1:364)  173  1.65 0.00 0.00  MoSU011F_A05_BE443936Td05P005A02P020A041F1_047.ab1      106   287 (0)  C MoSU011R_A05_BE443936Td05P005A02P020A041R1_047.ab1   (27)   260    79 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
27       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  86 nodes

 45 str. conn. components

Path
    1    MoSU011F_A05_BE443936Td05P005A02P020A041F1_047.ab1     1 
  185  C MoSU011R_A05_BE443936Td05P005A02P020A041R1_047.ab1   181 
  201    MoSU011F_A05_BE443936Td05P005A02P020A041F1_047.ab1   201 
  205  C MoSU011R_A05_BE443936Td05P005A02P020A041R1_047.ab1   161 
  217    MoSU011F_A05_BE443936Td05P005A02P020A041F1_047.ab1   217 
  221  C MoSU011R_A05_BE443936Td05P005A02P020A041R1_047.ab1   145 
Contig length: old 365, new 365

Contig length: old 365, new 365
New start: 0