No. words: 683; after pruning: 657


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 3.3 (1,1:297)  272  0.00 1.02 0.34  MoSU020F_G07_BE443936Td07P020F03P005A081F1_051.ab1        5   298 (52)  C MoSU020R_G07_BE443936Td07P020F03P005A081R1_051.ab1   (37)   296     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  136 nodes

 70 str. conn. components

Path
    1  C MoSU020R_G07_BE443936Td07P020F03P005A081R1_051.ab1   333 
   70    MoSU020F_G07_BE443936Td07P020F03P005A081F1_051.ab1    34 
   74  C MoSU020R_G07_BE443936Td07P020F03P005A081R1_051.ab1   260 
   94    MoSU020F_G07_BE443936Td07P020F03P005A081F1_051.ab1    58 
  106  C MoSU020R_G07_BE443936Td07P020F03P005A081R1_051.ab1   228 
  154    MoSU020F_G07_BE443936Td07P020F03P005A081F1_051.ab1   118 
  162  C MoSU020R_G07_BE443936Td07P020F03P005A081R1_051.ab1   172 
  226    MoSU020F_G07_BE443936Td07P020F03P005A081F1_051.ab1   190 
  234  C MoSU020R_G07_BE443936Td07P020F03P005A081R1_051.ab1   100 
  238    MoSU020F_G07_BE443936Td07P020F03P005A081F1_051.ab1   202 
  306  C MoSU020R_G07_BE443936Td07P020F03P005A081R1_051.ab1    28 
  310    MoSU020F_G07_BE443936Td07P020F03P005A081F1_051.ab1   274 
Contig length: old 385, new 386

Contig length: old 386, new 386
New start: 0