No. words: 795; after pruning: 769


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 5.1 (1,1:374)  350  0.82 0.00 0.27  MoSU011F_A09_BE443936Td09P005A02P020A041F1_079.ab1        5   370 (50)  C MoSU011R_A09_BE443936Td09P005A02P020A041R1_079.ab1   (5)   370     6 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  172 nodes

 88 str. conn. components

Path
    1  C MoSU011R_A09_BE443936Td09P005A02P020A041R1_079.ab1   375 
   17    MoSU011F_A09_BE443936Td09P005A02P020A041F1_079.ab1    16 
   94  C MoSU011R_A09_BE443936Td09P005A02P020A041R1_079.ab1   282 
  114    MoSU011F_A09_BE443936Td09P005A02P020A041F1_079.ab1   113 
  146  C MoSU011R_A09_BE443936Td09P005A02P020A041R1_079.ab1   230 
  154    MoSU011F_A09_BE443936Td09P005A02P020A041F1_079.ab1   153 
  194  C MoSU011R_A09_BE443936Td09P005A02P020A041R1_079.ab1   182 
  202    MoSU011F_A09_BE443936Td09P005A02P020A041F1_079.ab1   201 
  218  C MoSU011R_A09_BE443936Td09P005A02P020A041R1_079.ab1   158 
  226    MoSU011F_A09_BE443936Td09P005A02P020A041F1_079.ab1   225 
  234  C MoSU011R_A09_BE443936Td09P005A02P020A041R1_079.ab1   142 
  286    MoSU011F_A09_BE443936Td09P005A02P020A041F1_079.ab1   285 
  294  C MoSU011R_A09_BE443936Td09P005A02P020A041R1_079.ab1    82 
  322    MoSU011F_A09_BE443936Td09P005A02P020A041F1_079.ab1   321 
  343  C MoSU011R_A09_BE443936Td09P005A02P020A041R1_079.ab1    33 
  351    MoSU011F_A09_BE443936Td09P005A02P020A041F1_079.ab1   350 
Contig length: old 420, new 421

Contig length: old 421, new 421
New start: 0