No. words: 1212; after pruning: 1186


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 11.7 (1,1:549)  532  0.00 0.00 0.00  MoSU013F_E11_BE444125At01P005A06P005A121F1_087.ab1        2   550 (61)  C MoSU013R_E11_BE444125At01P005A06P005A121R1_087.ab1   (52)   549     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  276 nodes

 140 str. conn. components

Path
    1  C MoSU013R_E11_BE444125At01P005A06P005A121R1_087.ab1   601 
  548    MoSU013F_E11_BE444125At01P005A06P005A121F1_087.ab1   497 
  560  C MoSU013R_E11_BE444125At01P005A06P005A121R1_087.ab1    42 
  568    MoSU013F_E11_BE444125At01P005A06P005A121F1_087.ab1   517 
  576  C MoSU013R_E11_BE444125At01P005A06P005A121R1_087.ab1    26 
  588    MoSU013F_E11_BE444125At01P005A06P005A121F1_087.ab1   537 
Contig length: old 662, new 662

Contig length: old 662, new 662
New start: 0