No. words: 1195; after pruning: 1169


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.6 (1,1:534)  513  0.19 0.00 0.19  MoSU013F_F11_BE444125At02P005A06P005A121F1_085.ab1        1   535 (65)  C MoSU013R_F11_BE444125At02P005A06P005A121R1_085.ab1   (61)   534     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  264 nodes

 134 str. conn. components

Path
    1  C MoSU013R_F11_BE444125At02P005A06P005A121R1_085.ab1   595 
  525    MoSU013F_F11_BE444125At02P005A06P005A121F1_085.ab1   464 
  533  C MoSU013R_F11_BE444125At02P005A06P005A121R1_085.ab1    63 
  545    MoSU013F_F11_BE444125At02P005A06P005A121F1_085.ab1   484 
  575  C MoSU013R_F11_BE444125At02P005A06P005A121R1_085.ab1    22 
  579    MoSU013F_F11_BE444125At02P005A06P005A121F1_085.ab1   518 
Contig length: old 660, new 661

Contig length: old 661, new 661
New start: 0