No. words: 1461; after pruning: 1435


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    9    0.0 11.3 (1,1:575)  531  0.53 0.00 0.53  MoSU013F_F12_BE444125Ld07P005A06P005A121F1_086.ab1       10   578 (158)  C MoSU013R_F12_BE444125Ld07P005A06P005A121R1_086.ab1   (159)   566     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 9       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  274 nodes

 139 str. conn. components

Path
    1  C MoSU013R_F12_BE444125Ld07P005A06P005A121R1_086.ab1   725 
  547    MoSU013F_F12_BE444125Ld07P005A06P005A121F1_086.ab1   397 
  551  C MoSU013R_F12_BE444125Ld07P005A06P005A121R1_086.ab1   175 
  627    MoSU013F_F12_BE444125Ld07P005A06P005A121F1_086.ab1   477 
  639  C MoSU013R_F12_BE444125Ld07P005A06P005A121R1_086.ab1    87 
  647    MoSU013F_F12_BE444125Ld07P005A06P005A121F1_086.ab1   497 
  651  C MoSU013R_F12_BE444125Ld07P005A06P005A121R1_086.ab1    75 
  655    MoSU013F_F12_BE444125Ld07P005A06P005A121F1_086.ab1   505 
  681  C MoSU013R_F12_BE444125Ld07P005A06P005A121R1_086.ab1    46 
  689    MoSU013F_F12_BE444125Ld07P005A06P005A121F1_086.ab1   539 
Contig length: old 885, new 886

Contig length: old 886, new 886
New start: 0