No. words: 1455; after pruning: 1415


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   10    0.0 11.3 (1,1:575)  546  0.00 0.00 0.18  MoSU013F_G12_BE444125Ld08P005A06P005A121F1_084.ab1       11   576 (157)  C MoSU013R_G12_BE444125Ld08P005A06P005A121R1_084.ab1   (157)   565     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
10       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  282 nodes

 143 str. conn. components

Path
    1  C MoSU013R_G12_BE444125Ld08P005A06P005A121R1_084.ab1   722 
  201    MoSU013F_G12_BE444125Ld08P005A06P005A121F1_084.ab1    54 
  209  C MoSU013R_G12_BE444125Ld08P005A06P005A121R1_084.ab1   514 
  673    MoSU013F_G12_BE444125Ld08P005A06P005A121F1_084.ab1   526 
  677  C MoSU013R_G12_BE444125Ld08P005A06P005A121R1_084.ab1    46 
  701    MoSU013F_G12_BE444125Ld08P005A06P005A121F1_084.ab1   554 
Contig length: old 879, new 880

Contig length: old 880, new 880
New start: 0 
S Change at: 126; seg lengths: entry 1, contig 1