No. words: 1183; after pruning: 1157


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.2 (1,1:547)  533  0.00 0.00 0.00  MoSU013F_B11_BE444125Tu02P005A06P005A121F1_093.ab1        1   548 (31)  C MoSU013R_B11_BE444125Tu02P005A06P005A121R1_093.ab1   (56)   548     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  274 nodes

 139 str. conn. components

Path
    1  C MoSU013R_B11_BE444125Tu02P005A06P005A121R1_093.ab1   604 
  496    MoSU013F_B11_BE444125Tu02P005A06P005A121F1_093.ab1   440 
  504  C MoSU013R_B11_BE444125Tu02P005A06P005A121R1_093.ab1   101 
  556    MoSU013F_B11_BE444125Tu02P005A06P005A121F1_093.ab1   500 
  560  C MoSU013R_B11_BE444125Tu02P005A06P005A121R1_093.ab1    45 
  564    MoSU013F_B11_BE444125Tu02P005A06P005A121F1_093.ab1   508 
  576  C MoSU013R_B11_BE444125Tu02P005A06P005A121R1_093.ab1    29 
  592    MoSU013F_B11_BE444125Tu02P005A06P005A121F1_093.ab1   536 
Contig length: old 635, new 635

Contig length: old 635, new 635
New start: 0