No. words: 1123; after pruning: 1097


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    6    0.0 6.0 (1,1:423)  400  0.24 0.24 0.00  MoSU003F_A10_BE444301Ld03P005E04E101F1_069.ab1        8   424 (147)  C MoSU003R_A10_BE444301Ld03P005E04E101R1_069.ab1   (134)   418     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  206 nodes

 105 str. conn. components

Path
    1  C MoSU003R_A10_BE444301Ld03P005E04E101R1_069.ab1   552 
  380    MoSU003F_A10_BE444301Ld03P005E04E101F1_069.ab1   252 
  456  C MoSU003R_A10_BE444301Ld03P005E04E101R1_069.ab1    97 
  468    MoSU003F_A10_BE444301Ld03P005E04E101F1_069.ab1   340 
  472  C MoSU003R_A10_BE444301Ld03P005E04E101R1_069.ab1    81 
  492    MoSU003F_A10_BE444301Ld03P005E04E101F1_069.ab1   364 
  504  C MoSU003R_A10_BE444301Ld03P005E04E101R1_069.ab1    49 
  508    MoSU003F_A10_BE444301Ld03P005E04E101F1_069.ab1   380 
  516  C MoSU003R_A10_BE444301Ld03P005E04E101R1_069.ab1    37 
  524    MoSU003F_A10_BE444301Ld03P005E04E101F1_069.ab1   396 
Contig length: old 699, new 699

Contig length: old 699, new 699
New start: 0