No. words: 1017; after pruning: 991


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.5 (1,1:473)  453  0.00 0.21 0.00  MoSU003F_A09_BE444301Tu01P005E04E101F1_065.ab1        1   474 (22)  C MoSU003R_A09_BE444301Tu01P005E04E101R1_065.ab1   (46)   475     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C MoSU003R_A09_BE444301Tu01P005E04E101R1_065.ab1   521 
   71    MoSU003F_A09_BE444301Tu01P005E04E101F1_065.ab1    25 
   84  C MoSU003R_A09_BE444301Tu01P005E04E101R1_065.ab1   437 
   88    MoSU003F_A09_BE444301Tu01P005E04E101F1_065.ab1    42 
  108  C MoSU003R_A09_BE444301Tu01P005E04E101R1_065.ab1   413 
  140    MoSU003F_A09_BE444301Tu01P005E04E101F1_065.ab1    94 
  144  C MoSU003R_A09_BE444301Tu01P005E04E101R1_065.ab1   377 
  160    MoSU003F_A09_BE444301Tu01P005E04E101F1_065.ab1   114 
  168  C MoSU003R_A09_BE444301Tu01P005E04E101R1_065.ab1   353 
  176    MoSU003F_A09_BE444301Tu01P005E04E101F1_065.ab1   130 
  280  C MoSU003R_A09_BE444301Tu01P005E04E101R1_065.ab1   241 
  288    MoSU003F_A09_BE444301Tu01P005E04E101F1_065.ab1   242 
  328  C MoSU003R_A09_BE444301Tu01P005E04E101R1_065.ab1   193 
  352    MoSU003F_A09_BE444301Tu01P005E04E101F1_065.ab1   306 
  392  C MoSU003R_A09_BE444301Tu01P005E04E101R1_065.ab1   129 
  400    MoSU003F_A09_BE444301Tu01P005E04E101F1_065.ab1   354 
  428  C MoSU003R_A09_BE444301Tu01P005E04E101R1_065.ab1    93 
  508    MoSU003F_A09_BE444301Tu01P005E04E101F1_065.ab1   462 
  512  C MoSU003R_A09_BE444301Tu01P005E04E101R1_065.ab1     9 
  516    MoSU003F_A09_BE444301Tu01P005E04E101F1_065.ab1   470 
Contig length: old 543, new 542

Contig length: old 542, new 542
New start: 0