No. words: 1212; after pruning: 1186


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 9.1 (1,1:436)  434  0.00 0.00 0.00  MoSU022F_C06_BE444691Ld05P005B06P005B121F1_044.ab1        2   437 (177)  C MoSU022R_C06_BE444691Ld05P005B06P005B121R1_044.ab1   (162)   436     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  220 nodes

 112 str. conn. components

Path
    1  C MoSU022R_C06_BE444691Ld05P005B06P005B121R1_044.ab1   598 
  494    MoSU022F_C06_BE444691Ld05P005B06P005B121F1_044.ab1   333 
  510  C MoSU022R_C06_BE444691Ld05P005B06P005B121R1_044.ab1    89 
  522    MoSU022F_C06_BE444691Ld05P005B06P005B121F1_044.ab1   361 
  530  C MoSU022R_C06_BE444691Ld05P005B06P005B121R1_044.ab1    69 
  534    MoSU022F_C06_BE444691Ld05P005B06P005B121F1_044.ab1   373 
  546  C MoSU022R_C06_BE444691Ld05P005B06P005B121R1_044.ab1    53 
  550    MoSU022F_C06_BE444691Ld05P005B06P005B121F1_044.ab1   389 
  566  C MoSU022R_C06_BE444691Ld05P005B06P005B121R1_044.ab1    33 
  570    MoSU022F_C06_BE444691Ld05P005B06P005B121F1_044.ab1   409 
Contig length: old 775, new 775

Contig length: old 775, new 775
New start: 0