No. words: 1204; after pruning: 1178


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.8 (1,1:439)  433  0.00 0.00 0.23  MoSU022F_F06_BE444691Ld08P005B06P005B121F1_038.ab1        1   440 (175)  C MoSU022R_F06_BE444691Ld08P005B06P005B121R1_038.ab1   (150)   439     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1  C MoSU022R_F06_BE444691Ld08P005B06P005B121R1_038.ab1   589 
  438    MoSU022F_F06_BE444691Ld08P005B06P005B121F1_038.ab1   288 
  442  C MoSU022R_F06_BE444691Ld08P005B06P005B121R1_038.ab1   148 
  482    MoSU022F_F06_BE444691Ld08P005B06P005B121F1_038.ab1   332 
  498  C MoSU022R_F06_BE444691Ld08P005B06P005B121R1_038.ab1    92 
  510    MoSU022F_F06_BE444691Ld08P005B06P005B121F1_038.ab1   360 
  542  C MoSU022R_F06_BE444691Ld08P005B06P005B121R1_038.ab1    48 
  562    MoSU022F_F06_BE444691Ld08P005B06P005B121F1_038.ab1   412 
Contig length: old 764, new 765

Contig length: old 765, new 765
New start: 0