No. words: 1671; after pruning: 1645


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.2 (1,1:1019)  591  2.61 0.00 0.00  MoSU035F_F11_BE445287At02P019B05P019B111F1_085.ab1      271   921 (0)  C MoSU035R_F11_BE445287At02P019B05P019B111R1_085.ab1   (0)   750   100 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  270 nodes

 137 str. conn. components

Path
    1    MoSU035F_F11_BE445287At02P019B05P019B111F1_085.ab1     1 
  699  C MoSU035R_F11_BE445287At02P019B05P019B111R1_085.ab1   322 
  703    MoSU035F_F11_BE445287At02P019B05P019B111F1_085.ab1   703 
  727  C MoSU035R_F11_BE445287At02P019B05P019B111R1_085.ab1   294 
  731    MoSU035F_F11_BE445287At02P019B05P019B111F1_085.ab1   731 
  767  C MoSU035R_F11_BE445287At02P019B05P019B111R1_085.ab1   254 
  779    MoSU035F_F11_BE445287At02P019B05P019B111F1_085.ab1   779 
  799  C MoSU035R_F11_BE445287At02P019B05P019B111R1_085.ab1   222 
  819    MoSU035F_F11_BE445287At02P019B05P019B111F1_085.ab1   819 
  839  C MoSU035R_F11_BE445287At02P019B05P019B111R1_085.ab1   182 
  847    MoSU035F_F11_BE445287At02P019B05P019B111F1_085.ab1   847 
  855  C MoSU035R_F11_BE445287At02P019B05P019B111R1_085.ab1   166 
  878    MoSU035F_F11_BE445287At02P019B05P019B111F1_085.ab1   878 
  882  C MoSU035R_F11_BE445287At02P019B05P019B111R1_085.ab1   139 
Contig length: old 1020, new 1020

Contig length: old 1020, new 1020
New start: 0 
S Change at: 906; seg lengths: entry 1, contig 1