No. words: 1838; after pruning: 1798


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.7 (1,1:1041)  784  0.13 0.00 0.00  MoSU035F_C12_BE445287Ld04P019B05P019B111F1_092.ab1      131   926 (0)  C MoSU035R_C12_BE445287Ld04P019B05P019B111R1_092.ab1   (0)   912   117 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  394 nodes

 199 str. conn. components

Path
    1    MoSU035F_C12_BE445287Ld04P019B05P019B111F1_092.ab1     1 
  394  C MoSU035R_C12_BE445287Ld04P019B05P019B111R1_092.ab1   649 
  398    MoSU035F_C12_BE445287Ld04P019B05P019B111F1_092.ab1   398 
  410  C MoSU035R_C12_BE445287Ld04P019B05P019B111R1_092.ab1   633 
  418    MoSU035F_C12_BE445287Ld04P019B05P019B111F1_092.ab1   418 
  454  C MoSU035R_C12_BE445287Ld04P019B05P019B111R1_092.ab1   589 
  462    MoSU035F_C12_BE445287Ld04P019B05P019B111F1_092.ab1   462 
  482  C MoSU035R_C12_BE445287Ld04P019B05P019B111R1_092.ab1   561 
  566    MoSU035F_C12_BE445287Ld04P019B05P019B111F1_092.ab1   566 
  574  C MoSU035R_C12_BE445287Ld04P019B05P019B111R1_092.ab1   469 
  578    MoSU035F_C12_BE445287Ld04P019B05P019B111F1_092.ab1   578 
  594  C MoSU035R_C12_BE445287Ld04P019B05P019B111R1_092.ab1   449 
  622    MoSU035F_C12_BE445287Ld04P019B05P019B111F1_092.ab1   622 
  638  C MoSU035R_C12_BE445287Ld04P019B05P019B111R1_092.ab1   405 
  658    MoSU035F_C12_BE445287Ld04P019B05P019B111F1_092.ab1   658 
  662  C MoSU035R_C12_BE445287Ld04P019B05P019B111R1_092.ab1   381 
Contig length: old 1042, new 1042

Contig length: old 1042, new 1042
New start: 0