No. words: 1725; after pruning: 1671


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.2 (1,1:1040)  657  0.73 0.00 0.00  MoSU035F_D12_BE445287Ld05P019B05P019B111F1_090.ab1       96   779 (0)  C MoSU035R_D12_BE445287Ld05P019B05P019B111R1_090.ab1   (0)   946   263 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  328 nodes

 166 str. conn. components

Path
    1    MoSU035F_D12_BE445287Ld05P019B05P019B111F1_090.ab1     1 
  248  C MoSU035R_D12_BE445287Ld05P019B05P019B111R1_090.ab1   794 
  252    MoSU035F_D12_BE445287Ld05P019B05P019B111F1_090.ab1   252 
  316  C MoSU035R_D12_BE445287Ld05P019B05P019B111R1_090.ab1   726 
  320    MoSU035F_D12_BE445287Ld05P019B05P019B111F1_090.ab1   320 
  338  C MoSU035R_D12_BE445287Ld05P019B05P019B111R1_090.ab1   704 
  354    MoSU035F_D12_BE445287Ld05P019B05P019B111F1_090.ab1   354 
  366  C MoSU035R_D12_BE445287Ld05P019B05P019B111R1_090.ab1   676 
  382    MoSU035F_D12_BE445287Ld05P019B05P019B111F1_090.ab1   382 
  394  C MoSU035R_D12_BE445287Ld05P019B05P019B111R1_090.ab1   648 
  402    MoSU035F_D12_BE445287Ld05P019B05P019B111F1_090.ab1   402 
  417  C MoSU035R_D12_BE445287Ld05P019B05P019B111R1_090.ab1   625 
  433    MoSU035F_D12_BE445287Ld05P019B05P019B111F1_090.ab1   433 
  437  C MoSU035R_D12_BE445287Ld05P019B05P019B111R1_090.ab1   605 
  493    MoSU035F_D12_BE445287Ld05P019B05P019B111F1_090.ab1   493 
  497  C MoSU035R_D12_BE445287Ld05P019B05P019B111R1_090.ab1   545 
Contig length: old 1041, new 1041

Contig length: old 1041, new 1041
New start: 0 
S Change at: 991; seg lengths: entry 1, contig 1