No. words: 1611; after pruning: 1571


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.9 (1,1:1042)  549  0.70 0.00 0.00  MoSU035F_E12_BE445287Ld06P019B05P019B111F1_088.ab1      138   705 (0)  C MoSU035R_E12_BE445287Ld06P019B05P019B111R1_088.ab1   (0)   906   339 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  272 nodes

 138 str. conn. components

Path
    1    MoSU035F_E12_BE445287Ld06P019B05P019B111F1_088.ab1     1 
  248  C MoSU035R_E12_BE445287Ld06P019B05P019B111R1_088.ab1   796 
  252    MoSU035F_E12_BE445287Ld06P019B05P019B111F1_088.ab1   252 
  284  C MoSU035R_E12_BE445287Ld06P019B05P019B111R1_088.ab1   760 
  288    MoSU035F_E12_BE445287Ld06P019B05P019B111F1_088.ab1   288 
  316  C MoSU035R_E12_BE445287Ld06P019B05P019B111R1_088.ab1   728 
  320    MoSU035F_E12_BE445287Ld06P019B05P019B111F1_088.ab1   320 
  339  C MoSU035R_E12_BE445287Ld06P019B05P019B111R1_088.ab1   705 
  347    MoSU035F_E12_BE445287Ld06P019B05P019B111F1_088.ab1   347 
  358  C MoSU035R_E12_BE445287Ld06P019B05P019B111R1_088.ab1   686 
  362    MoSU035F_E12_BE445287Ld06P019B05P019B111F1_088.ab1   362 
  370  C MoSU035R_E12_BE445287Ld06P019B05P019B111R1_088.ab1   674 
  382    MoSU035F_E12_BE445287Ld06P019B05P019B111F1_088.ab1   382 
  394  C MoSU035R_E12_BE445287Ld06P019B05P019B111R1_088.ab1   650 
  402    MoSU035F_E12_BE445287Ld06P019B05P019B111F1_088.ab1   402 
  406  C MoSU035R_E12_BE445287Ld06P019B05P019B111R1_088.ab1   638 
  410    MoSU035F_E12_BE445287Ld06P019B05P019B111F1_088.ab1   410 
  414  C MoSU035R_E12_BE445287Ld06P019B05P019B111R1_088.ab1   630 
  434    MoSU035F_E12_BE445287Ld06P019B05P019B111F1_088.ab1   434 
  438  C MoSU035R_E12_BE445287Ld06P019B05P019B111R1_088.ab1   606 
Contig length: old 1043, new 1043

Contig length: old 1043, new 1043
New start: 0 
S Change at: 220; seg lengths: entry 1, contig 1