No. words: 1831; after pruning: 1777


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.0 (1,1:1057)  755  0.39 0.00 0.00  MoSU035F_B11_BE445287Tu02P019B05P019B111F1_093.ab1      154   926 (0)  C MoSU035R_B11_BE445287Tu02P019B05P019B111R1_093.ab1   (0)   905   133 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  376 nodes

 190 str. conn. components

Path
    1    MoSU035F_B11_BE445287Tu02P019B05P019B111F1_093.ab1     1 
  438  C MoSU035R_B11_BE445287Tu02P019B05P019B111R1_093.ab1   621 
  446    MoSU035F_B11_BE445287Tu02P019B05P019B111F1_093.ab1   446 
  542  C MoSU035R_B11_BE445287Tu02P019B05P019B111R1_093.ab1   517 
  562    MoSU035F_B11_BE445287Tu02P019B05P019B111F1_093.ab1   562 
  614  C MoSU035R_B11_BE445287Tu02P019B05P019B111R1_093.ab1   445 
  622    MoSU035F_B11_BE445287Tu02P019B05P019B111F1_093.ab1   622 
  646  C MoSU035R_B11_BE445287Tu02P019B05P019B111R1_093.ab1   413 
  654    MoSU035F_B11_BE445287Tu02P019B05P019B111F1_093.ab1   654 
  666  C MoSU035R_B11_BE445287Tu02P019B05P019B111R1_093.ab1   393 
Contig length: old 1058, new 1058

Contig length: old 1058, new 1058
New start: 0